CV

Junxi Yi

junxiyi2@illinois.edu
(447) 902-0907
Urbana, Illinois, US

Summary

Ph.D. student in Bioengineering at the University of Illinois Urbana-Champaign. I develop ultrasound-responsive mechanophore nanocarriers and imaging-guided actuation methods to enable non-invasive, deep-tissue mechanochemical control. My work advances mechanistic understanding and system design, including bubble-nucleation and gas-vesicle integration strategies to enhance activation efficiency and localization.

Education

  • Ph.D. in Bioengineering
    University of Illinois at Urbana-Champaign
  • B.Sc. in Chemical Biology
    2022
    University of Science and Technology of China

Work Experience

  • Ph.D. Researcher
    2022 -
    University of Illinois at Urbana-Champaign
    • Led development of ultrasound-responsive mechanophore nanocarriers for controlled drug release and cancer therapy.
    • Designed bubble-nucleation and gas-vesicle integration strategies to enhance mechanophore activation efficiency and localization.
    • Mentored undergraduate students in nanoparticle synthesis and in vitro nanomedicine testing.
  • The University of Edinburgh
    2021-07 - 2021-10
    Designed plant E3 ubiquitin ligases to degrade pathogen effectors and improve plant immunity.
  • McMaster University
    2020-07 - 2020-10
    Developed a machine-learning algorithm for molecular potential energy surface calculations.

Skills

Wet Lab

  • Mammalian cell culture
  • DNA/RNA extraction
  • PCR
  • Transfection
  • Lentivirus transduction

Bioimaging

  • Ultrasound imaging
  • In vitro testing
  • Experimental design

Computational

  • Python
  • MATLAB
  • PyTorch
  • Statistics

Tools

  • LaTeX
  • Git

Publications

  • Ultrasound-driven mechanophore activation in living plants
    2026
    Proceedings of the National Academy of Sciences of the United States of America
    In press.
  • Near-infrared-triggered nanodroplets for macrophage-targeted cancer immunotherapy
    2025
    Small Methods
    Frontispiece paper.
  • Injectable mechanophore nanoparticles for deep-tissue mechanochemical dynamic therapy
    2024
  • Using protein design to monomerize a bright near-infrared fluorescent protein
    2024
    ACS Synthetic Biology

Teaching

  • BIOE 486 – Applied Deep Learning in Biomedical Imaging
    Spri
    University of Illinois Urbana-Champaign
    Role: Teaching Assistant
    Developed and graded assignments; supported PyTorch-based imaging pipelines.
  • BIOE 303 – Quantitative Physiology Lab
    Fall
    University of Illinois Urbana-Champaign
    Role: Teaching Assistant
    Led lab sections; graded reports; provided structured feedback.
  • BIOE 210 – Linear Algebra for Biomedical Data Science
    Fall
    University of Illinois Urbana-Champaign
    Role: Teaching Assistant
    Delivered lectures; developed MATLAB demos; hosted office hours.

Interests

  • Ultrasound-triggered mechanochemistry
  • Nanomedicine
  • Immunotherapy